Presentation
I am an INRIA PhD student in BONSAI bioinformatics research team at University of Lille 1, France. I study de novo genome sequencing and assembly, with third generation sequencing technology.
Pierre Marijon
PhD student in bioinformatics
pierre.marijon [at] inria.fr
Scientific work
- Poster presentation at JOBIM 2018 State-of-the-art long-read overlapping tools comparative analysis (pdf)
- Talks Debugging long-read genome assemblies using string graph analysis, at Seqbio 2017 (pdf)
- Poster presentation at JOBIM 2017 Debugging long-read genome assemblies using string graph analysis (pdf)
- Review and organization for JOBIM 2017
- Review and organization for JeBiF Workshop @ JOBIM 2017 Lille
Scientific tools
- Assembly_report: an assembly analyzer and debugger for Canu and mini{map|asm}
- paf2gfa: convert overlap list (in Pairwise Alignment Format) to overlap graph (in Graphical Format Assembly GFA1)
- yacrd: using all-against-all read mapping for chimeras read detection
Side project
- My scientific blog
- Co-founder of Labsquare Community
- Author on french blog bioinfo-fr