Presentation
I am currently a post-doc in Tobias Marshall's team.
I did my thesis in the BONSAI team, I was supervised by Rayan Chikhi and Jean Stéphane Varré.
My work focuses on long reads correction and their use for variants detection, de novo genomes assembly, construction and analysis of pangenomes.
Publications
My thesis is avaible on these.fr
Main
Contribution
- Cutevariant: a GUI-based desktop application to explore genetics variations (biorxiv)
- Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads (Nature Biotechnology)
- A Graph-Theoretic Barcode Ordering Model for Linked-Reads (WABI 2020)